Table 4

Novel effector candidates identified by searching for genes with a mimp IR in their promoter
Gene description Mimp in promoter1 SP2 Protein in xylem sap
Encoded protein Chromosome FOXG or genomic location Identified in search Distance mimp IR-ATG [bp]
SIX genes
Six1 (corrected) 14 FOXG_16418 (incorrect) no3 1192 yes yes
Six2 14 FOXG_16416 yes 211 yes yes
Six3 14 FOXG_16398 yes 232 yes yes
Six5 14 SC36[3273-3407] no4 1132 yes yes
Six6 14 FOXG_14246 yes 668 yes yes
Six7 14 SC51[65216-65875] no (sequence gap) yes yes
Novel effector candidates
Six8 14, 14 FOXG_17445, FOXG_16464 no4 109 yes yes
Six8b 3, 3, 6, 6 SC18[1122404-122824],SC18[862700-863120], SC41 [221648-222068], SC21[219855-220275] yes 1026, 1972 yes no
Six9 14 FOXG_14223 yes 249 yes yes
Six10 14 FOXG_17457 no4 384 yes yes
Six11 14 SC22[806692-807024] yes 322, 852 yes yes
Six12 14 SC51[62415-62753] no5 837 no yes
Six13 6, 6 FOXG_17131 (5' extended), SC42[126863-127192] yes 1971 yes yes
Six14 14 SC36[135867-136180] yes 211, 258, 681, 1215 yes yes
FoAve1 14 SC36[201730-202101] yes 788 yes no
conserved secreted protein 14 FOXG_14254 yes 1312 yes no
secreted protein 15 SC38[202206-202388] yes 1717 yes no
secreted protein 14 SC51[127492-128836] yes 1236 yes no
Secreted enzymes
Orx1 14 FOXG_14258;FOXG_14236 yes 554 yes yes
catalase-peroxidase 6, 14 FOXG_17130, FOXG_17460 yes 921 yes yes
metalloprotease 3, 6 SC47[78991-79260], SC42[41025-41294] yes 394 yes no

1 distance between the mimp IR and the ATG start codon.

2 predicted signal peptide.

3 not identified because of a sequence gap in the genome assembly.

4 not identified because of a short first exon.

5 not identified due to absence of a signal peptide.

Schmidt et al.

Schmidt et al. BMC Genomics 2013 14:119   doi:10.1186/1471-2164-14-119

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