Table 2

Transposable elements on the Fol4287 pathogenicity chromosome
Classification Designation1 Number Full length
Order Superfamily Family Number number
Class I (retrotransposon) 237 237 58
LTR Gypsy/Ty3 24 MAGGY-like retrotransposon (3 types) 16 4
Skippy 8 1
Copia/Ty1 55 NHT2-like retrotransposon (5 types) 51 1
Pcretro3-like retrotransposon 4 1
unclassified 20 Yaret2 20 6
solo-LTR 28 Yaret2 solo-LTR 12 12
Gollum (NHT2-like retrotransposon type 3 LTR) 16 10
LINE 68 MGR583-like LINE element 31 3
Yaret1 25 3
Yaret1-like 12 0
SINE 32 Foxy 32 10
unrelated 10 Marsu 10 7
Class II (DNA transposons) - Subclass 1 208 208 108
Crypton 1 FoCrypton 1 1
TIR Tc1/mariner Pogo 41 Fot2 2 2
Fot3 7 2
Fot4 1 0
Fot5 23 6
Fot6 6 3
Fot8 2 0
Tc1 3 Impala 3 0
hAT 70 Folyt1 3 3
Folyt2 1 0
Frodo 5 3
Hornet 16 7
Drifter 1 1
NhORF4-like 2 1
Sam 1 1
YahAT1 6 5
YahAT2 9 4
YahAT3 3 1
YahAT4 2 1
YahAT5 4 2
YahAT6 7 3
YahAT7 10 1
Mutator 20 Hop 1 0
Hop3 6 4
Hop4 5 0
Hop5 2 1
Hop6 6 0
MITE 73 mimp (unclassified) 2 2
mimp1 24 16
mimp2 7 6
mimp3 6 5
mimp4 17 16
mFot5 14 11
Gimli 3 0
Class II (DNA transposons) - Subclass 2 9
Helitron 9 8
Class II (DNA transposons) - unclassified 40
unclassified 40 2
total number of TEs 494 494 176

1 designations in bold letters indicate TEs that have been described in Fusarium oxysporum before.

Schmidt et al.

Schmidt et al. BMC Genomics 2013 14:119   doi:10.1186/1471-2164-14-119

Open Data