Table 4

Pseudo-r2 values for logistic regressions for significantly and suggestively associated SNPs
Genotyping arrays only Genotyping arrays and annotations
McFadden McKelvey & Zavoina’s McFadden McKelvey & Zavoina’s
Significant 1 (no TSS) 0.07 0.14 0.11 0.28
Significant 2 (with TSS) 0.07 0.14 0.12 0.42
Significant 2 (without TSS) 0.07 0.14 0.11 0.28
Suggestive 1 (no TSS) 0.09 0.16 0.09 0.18
Suggestive 2 (with TSS) 0.09 0.16 0.09 0.18
Suggestive 2 (without TSS) 0.09 0.16 0.09 0.18

Kindt et al.

Kindt et al. BMC Genomics 2013 14:108   doi:10.1186/1471-2164-14-108

Open Data