Table 1

Variation for predicted miRNA-gene target pairs

Index

No. of algorithms showing positive voting

Numbers of


miRNAs

Target links

Genes


miRecords (Xiao et al., 2009)


#1

3 algorithms

553

1,234,390

17,602

#2

4

535

272,505

15,278

#3

5

407

53,041

9,747

#4

6

159

9,691

2,783

#5

7

29

68

66

#6

3 ~ 11

553

1,569,741

17,636

#7

4 ~ 11

535

335,351

15,422

#8

5 ~ 11

408

62,846

9,851

#9

6 ~ 11

159

9,805

2,816

#10

7 ~ 11

40

114

104

#11

3 ~ 11 including DIANA-microT

0

0

0

#12

3 ~ 11 including Microinspector

56

184

160

#13

3 ~ 11 including miRanda

552

1,416,379

17,584

#14

3 ~ 11 including mirtarget2

530

184,544

13,841

#15

3 ~ 11 including miTarget

0

0

0

#16

3 ~ 11 including NBmiRTar

42

201

172

#17

3 ~ 11 including PicTar

163

64,658

6,515

#18

3 ~ 11 including pita

551

1,559,586

16,676

#19

3 ~ 11 including rna22

54

232

197

#20

3 ~ 11 including rnahybrid

552

1,548,423

17,630

#21

3 ~ 11 including TargetScan

412

343,190

16,127


miRGen [23]


#22

DIANA-microT

175

1,816

1,206

#23

miRanda (microrna.org)

469

430,878

16,699

#24

miRanda (miRBase)

156

38,821

5,444

#25

PicTar (4-way)

177

68,100

6,391

#26

PicTar (5-way)

128

22,028

2,433

#27

TargetScanS

237

75,044

7,546


Lee et al. BMC Genomics 2012 13(Suppl 7):S17   doi:10.1186/1471-2164-13-S7-S17

Open Data