Table 3

Summary of module genes having positive association results in previous studies

Gene

Module gene set$

# SNPs

Chr.

Start (bp)

Stop (bp)

PVEGAS-all

PVEGAS-top

PminP


NOS1AP

a, m

125

1

160306204

160606437

0.005

0.007

1.07 × 10-4

PTGS2

t, m

14

1

184907591

184916179

0.013

8.5 × 10-4

1.07 × 10-5

TSNAX

t

11

1

229731021

229768892

0.476

0.306

0.113

DISC1

m

106

1

229829183

230243641

0.349

0.100

0.004

FLNB

a

47

3

57969166

58133017

0.030

0.034

0.007

GSK3B

t

40

3

121028235

121295203

0.141

0.073

0.011

PDE4D

m

193

5

58300622

59225378

0.277

0.018

6.16 × 10-5

IL4

a

12

5

132037271

132046267

0.069

0.019

0.007

DTNBP1

a

52

6

15631017

15771250

0.020

0.022

0.008

RPP21

t, m

48

6

30420915

30422611

0.014

0.001

1.04 × 10-4

LTA

m

43

6

31648071

31650077

0.450

0.075

0.003

TNF

m

43

6

31651328

31654091

0.598

0.184

0.003

ESR1

a, t, m

86

6

152053323

152466101

0.091

0.027

0.004

TBP

t

13

6

170705395

170723872

0.031

0.019

0.010

EGFR

t, m

72

7

55054218

55242525

0.556

0.294

0.026

YWHAZ

a, t, m

17

8

102000089

102034745

0.857

0.685

0.268

GRIN1

a, t, m

3

9

139153429

139183029

0.016

0.005

0.004

ATE1

m

59

10

123492614

123677536

0.491

0.155

9.28 × 10-4

IFNG

t, m

26

12

66834816

66839788

0.068

0.007

0.002

NOS1

m

45

12

116135361

116283965

0.643

0.315

0.028

DGKH

t

68

13

41520888

41701888

0.106

0.031

0.002

AKT1

a, t

6

14

104306731

104333125

0.076

0.056

0.026

TP53

t, m

11

17

7512444

7531588

0.540

0.219

0.075

PRKCA

t

129

17

61729387

62237324

0.995

0.857

0.029

MAG

m

13

19

40474877

40496547

0.097

0.037

0.003

DNMT3B

t, m

21

20

30813851

30860823

0.026

0.002

1.75 × 10-4

MYH9

m

37

22

35007271

35113927

0.050

0.017

5.75 × 10-4


$a: VEGAS-all; t: VEGAS-top; m: minP.

Jia and Zhao BMC Genomics 2012 13(Suppl 6):S15   doi:10.1186/1471-2164-13-S6-S15

Open Data