Figure 1.

Open Mutation Miner (OMM) System Overview Input documents are processed through a text mining pipeline implemented in GATE, which (1) performs preprocessing; (2) detects mutation mentions; (3) detects protein properties; and (4) detects impact mentions and links the detected entities. Results can be exported in various formats, in particular by populating the OMM ontology.

Naderi and Witte BMC Genomics 2012 13(Suppl 4):S10   doi:10.1186/1471-2164-13-S4-S10