Figure 1.

Genotype calling accuracy for reads aligned uniquely to the reference genome, reads aligned uniquely to the CCDS transcripts, hard merged alignments, and soft merged alignments (NA12878 dataset using 41,961 Hapmap SNPs in CCDS exons as gold standard and SNVQ for genotype calling).

Duitama et al. BMC Genomics 2012 13(Suppl 2):S6   doi:10.1186/1471-2164-13-S2-S6