Table 1

Runtimes

Coverage

# SNPs

# Reads

Runtime


5X

1482

120

15 secs

10X

1970

240

61 secs

15X

2186

360

155 secs

20X

2280

480

430 secs


Runtimes, simulating sequencing of the low diversity dataset with high error rate and "Simple" SNP caller (so that each read is considered as a unique haplotype).

O'Neil and Emrich BMC Genomics 2012 13(Suppl 2):S4   doi:10.1186/1471-2164-13-S2-S4

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