Table 1

The number of peaks called by different algorithms and at thresholds, and corresponding number of mapped genes

Method

Total number of peaks

Number of genes mapped


MACS, p = 1E-8

1,966

996

MACS, p = 1E-5

4,678

2,054

MACS, p = 1E-3

23,306

6,341

T-PIC, p = 1E-3

4,453

1,676

T-PIC, p = 1E-2

6,598

2,318

BayesPeak (PP = 0.90)

15,622

4,495

BayesPeak (PP = 0.70)

21,373

5,507

BayesPeak (PP = 0.5)

27,990

6,533

Union*

38,324

8,057

Intersection*

4,811

2,029


* Union and intersection of the peaks by the three methods, as shown in Figure 1.

Osmanbeyoglu et al. BMC Genomics 2012 13(Suppl 1):S1   doi:10.1186/1471-2164-13-S1-S1

Open Data