Table 1

Parameters of the linkage map for the YI pedigree in C. japonica

Mapping parameters

YI pedigree


Total number of available markers

1364


Number of distorted markers (P < 0.01)

74


Total number of markers without segregation distortion

1290


Number of unlinked markers

11


Total number of assigned markers

1279


Number of positioned markers

1262


Number of gSNP markers

761


Number of hrmSNP markers

159


Number of CAPS markers

121


Number of RFLP markers

117


Number of SSR markers

34


Number of ssSNP markers

33


Number of meaSNP markers

15


Number of EST-SSR markers

16


Number of SNP markers

5


Number of ALP markers

1


Average map density, cM

1.1


Total observed map length G o, cM

1405.2


Expected map length G e, cM

1430.6


Observed map coverage C o (%)

98.2


Expected map coverage C e (%)

100.0


Moriguchi et al. BMC Genomics 2012 13:95   doi:10.1186/1471-2164-13-95

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