Table 3

Boundaries and flanking ORFs of aligned segments between MAP K-10 and MAP S397 genomes

K-10 coordinates by Wynne [28]

K-10 coordinates by Li [19]

Flanking ORF

Approx. size (Kb)

Alignment between K-10 and S397

ID

Left end

Right end

Left end

Right end

Left end

Right end


1

4751793

11164

4748984

11164

IS900

IS_MAP03 and IS1311

92

Forward

2

13889

325818

4197078

3885146

IS_MAP03 and IS1311

No known IS element

312

Forward

3

357239

1424396

3853725

2786561

IS_MAP02

No known IS element

1067

Forward

4

1424397

1627687

2786560

2583268

No known IS element

ISmav2

203

Inverted

5

1629051

1828408

2581904

2382587

ISmav2

IS1311

199

Forward

6

1829822

3004096

2381173

1206891

IS1311

IS1311

1174

Inverted

7

3005512

3524059

1205475

686927

IS1311

ISmav2

519

Forward

8

3525433

3737882

685553

473103

ISmav2

No known IS element

212

Inverted

9

3737883

3833853

473102

377132

No known IS element

No known IS element

96

Forward

10

3849713

3890501

361272

320484

IS_MAP02

No known IS element

41

Inverted

11

3890502

4098807

320483

112177

No known IS element

IS1311

208

Inverted

12

4100223

4176993

110761

33991

IS1311

IS1311

77

Forward

13

4177670

4199835

33287

11158

IS1311

IS1311

22

Inverted

14

4201310

unknown1

4198493

unknown1

IS1311

N/A

562

Inverted


Bannantine et al. BMC Genomics 2012 13:89   doi:10.1186/1471-2164-13-89

Open Data