Table 3 |
||||||||
|
Boundaries and flanking ORFs of aligned segments between MAP K-10 and MAP S397 genomes |
||||||||
|
K-10 coordinates by Wynne [28] |
K-10 coordinates by Li [19] |
Flanking ORF |
Approx. size (Kb) |
Alignment between K-10 and S397 |
||||
|
ID |
Left end |
Right end |
Left end |
Right end |
Left end |
Right end |
||
|
|
||||||||
|
1 |
4751793 |
11164 |
4748984 |
11164 |
IS900 |
IS_MAP03 and IS1311 |
92 |
Forward |
|
2 |
13889 |
325818 |
4197078 |
3885146 |
IS_MAP03 and IS1311 |
No known IS element |
312 |
Forward |
|
3 |
357239 |
1424396 |
3853725 |
2786561 |
IS_MAP02 |
No known IS element |
1067 |
Forward |
|
4 |
1424397 |
1627687 |
2786560 |
2583268 |
No known IS element |
ISmav2 |
203 |
Inverted |
|
5 |
1629051 |
1828408 |
2581904 |
2382587 |
ISmav2 |
IS1311 |
199 |
Forward |
|
6 |
1829822 |
3004096 |
2381173 |
1206891 |
IS1311 |
IS1311 |
1174 |
Inverted |
|
7 |
3005512 |
3524059 |
1205475 |
686927 |
IS1311 |
ISmav2 |
519 |
Forward |
|
8 |
3525433 |
3737882 |
685553 |
473103 |
ISmav2 |
No known IS element |
212 |
Inverted |
|
9 |
3737883 |
3833853 |
473102 |
377132 |
No known IS element |
No known IS element |
96 |
Forward |
|
10 |
3849713 |
3890501 |
361272 |
320484 |
IS_MAP02 |
No known IS element |
41 |
Inverted |
|
11 |
3890502 |
4098807 |
320483 |
112177 |
No known IS element |
IS1311 |
208 |
Inverted |
|
12 |
4100223 |
4176993 |
110761 |
33991 |
IS1311 |
IS1311 |
77 |
Forward |
|
13 |
4177670 |
4199835 |
33287 |
11158 |
IS1311 |
IS1311 |
22 |
Inverted |
|
14 |
4201310 |
unknown1 |
4198493 |
unknown1 |
IS1311 |
N/A |
562 |
Inverted |
|
|
||||||||
|
Bannantine et al. BMC Genomics 2012 13:89 doi:10.1186/1471-2164-13-89 |
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