Table 1

Summary of small RNA sequencing data analysis

Leaves

Roots

Seedlings

Flowers


Total raw reads

16869046

20464127

17188077

27937376


High-quality readsa

11797480

16722005

16846110

20238107


Unique sequence tags

3372753

4187414

4015702

3453543


Total Rfam matching sequences

757788

5653553

5307793

9726833


Unique Rfam matching sequences

51227

60121

224240

96726


Perfect miRNA matching sequencesb

265161

307003

582159

1415225


Total unfiltered isoform sequences

798835

287027

467691

228556


Total miRNA isoform sequences

744348

200630

335274

60167


aSequences after quality, adapter and size filters. bTotal sequences from conserved miRNAs.

Peláez et al. BMC Genomics 2012 13:83   doi:10.1186/1471-2164-13-83

Open Data