Open Access Highly Accessed Research article

RNA-Seq quantification of the human small airway epithelium transcriptome

Neil R Hackett1*, Marcus W Butler1*, Renat Shaykhiev1*, Jacqueline Salit1*, Larsson Omberg2, Juan L Rodriguez-Flores1*, Jason G Mezey12*, Yael Strulovici-Barel1*, Guoqing Wang1*, Lukas Didon1* and Ronald G Crystal1*

Author Affiliations

1 Department of Genetic Medicine, Weill Cornell Medical College, New York, New York, USA

2 Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York, USA

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BMC Genomics 2012, 13:82  doi:10.1186/1471-2164-13-82

Published: 29 February 2012

Additional files

Additional file 1:

Additional Data Methods. Additional Table S1. Demographics of the study population and biologic samples. Additional Table S2. Mapping summary. Additional Table S3. Comparison of the median expression levels of different categories of genes in the small airway epithelium of healthy nonsmokers and healthy smokers. Additional Table S4. Cell type-specific gene lists. Additional Table S5. Reproducibility of smoking-responsive genes discovered by microarray using RNA-Seq method. Additional Table S6. Reproducibility of smoking-responsive genes discovered by RNA-Seq using microarray method. Additional Figure Legends. Additional figures S1 and S2.

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