Table 3 |
|||
|
Annotation of INDELs in the Quarter Horse genome |
|||
|
INDEL Location |
Total |
Homozygous |
Heterozygous |
|
|
|||
|
INDELs (1 bp - 8 bp) |
193,271 |
127,173 |
66,098 |
|
Intergenic |
122,571 |
78,538 |
44,033 |
|
Intergenic (Upstream w/in 1 kb) |
5,900 |
5,073 |
827 |
|
Intergenic (Downstream w/in 1 kb) |
2,557 |
1,853 |
704 |
|
Intergenic (Up/Down w/in 1 kb) |
126 |
105 |
21 |
|
Genic |
62,117 |
41,604 |
20,513 |
|
|
|||
|
Intron |
57,618 |
37,377 |
20,241 |
|
Non-Coding Exon |
277 |
239 |
38 |
|
5' UTR |
594 |
557 |
37 |
|
3' UTR |
249 |
195 |
54 |
|
Intron Splice Site |
749 |
735 |
14 |
|
Exon Splice Site |
771 |
762 |
9 |
|
Coding Exon |
1,859 |
1,739 |
120 |
|
|
|||
|
Frameshift Deletion |
1,594 |
1,533 |
61 |
|
Frameshift Insertion |
980 |
940 |
40 |
|
Non-Frameshift Deletion |
23 |
4 |
19 |
|
Non-Frameshift Insertion |
12 |
5 |
7 |
|
Stop - Gain |
21 |
19 |
2 |
|
|
|||
|
Doan et al. BMC Genomics 2012 13:78 doi:10.1186/1471-2164-13-78 |
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