Table 3

Annotation of INDELs in the Quarter Horse genome

INDEL Location

Total

Homozygous

Heterozygous


INDELs (1 bp - 8 bp)

193,271

127,173

66,098

Intergenic

122,571

78,538

44,033

Intergenic (Upstream w/in 1 kb)

5,900

5,073

827

Intergenic (Downstream w/in 1 kb)

2,557

1,853

704

Intergenic (Up/Down w/in 1 kb)

126

105

21

Genic

62,117

41,604

20,513


Intron

57,618

37,377

20,241

Non-Coding Exon

277

239

38

5' UTR

594

557

37

3' UTR

249

195

54

Intron Splice Site

749

735

14

Exon Splice Site

771

762

9

Coding Exon

1,859

1,739

120


Frameshift Deletion

1,594

1,533

61

Frameshift Insertion

980

940

40

Non-Frameshift Deletion

23

4

19

Non-Frameshift Insertion

12

5

7

Stop - Gain

21

19

2


Doan et al. BMC Genomics 2012 13:78   doi:10.1186/1471-2164-13-78

Open Data