Probe and Target Sequences. Sample probe sequence in blue. All unique target sequences that are 2 base pairs or longer and that are perfect reverse complements of the probe in black. Columns 1 and 2 have the corresponding k and j values for each target sequence. The bottom row counts the number of times each probe position binds to a different target fragment.
Jakubek and Cutler BMC Genomics 2012 13:737 doi:10.1186/1471-2164-13-737