Table 3

Transitions and transversions in T. cruzi
Observed counts
Substitutions Global (all) Synonymous Non-synonymous Non-coding Nonsense
transitions (ts) AG + GA 104,421 45,652 58,581 170 18
CT + TC 96,208 55,758 40,200 208 42
transversions (tv) AC + CA 29,973 7,739 22,168 48 18
AT + TA 13,537 4,229 9,266 31 11
CG + GC 17,461 4,110 13,284 64 3
GT + TG 27,357 7,967 19,321 48 21
Ratio ts / tv 2.27 4.22 1.54 1.98 1.13

The set of high-quality SNPs was used to count the ocurrences of transitions and transversions in different relevant partitions of the data.

Ackermann et al.

Ackermann et al. BMC Genomics 2012 13:736   doi:10.1186/1471-2164-13-736

Open Data