How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
1 Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
2 Channing Laboratory, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, 02115, USA
BMC Genomics 2012, 13:734 doi:10.1186/1471-2164-13-734Published: 27 December 2012
Additional file 1:
Table S1. Refseq accession numbers for strains included in this study.
Format: XLSX Size: 41KB Download file
Additional file 2:
Table S2. Reads per annotated ORF in 156M fragment data set before and after background subtraction.
Format: XLSX Size: 252KB Download file
Additional file 3:
Figure S1. Correlation of coverage of the sense and antisense strands of annotated ORFs.
Format: TIFF Size: 1.5MB Download file