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Open Access Highly Accessed Research article

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

Brian J Haas1, Melissa Chin1, Chad Nusbaum1, Bruce W Birren1 and Jonathan Livny12*

Author Affiliations

1 Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA

2 Channing Laboratory, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, 02115, USA

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BMC Genomics 2012, 13:734  doi:10.1186/1471-2164-13-734

Published: 27 December 2012

Additional files

Additional file 1:

Table S1. Refseq accession numbers for strains included in this study.

Format: XLSX Size: 41KB Download file

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Additional file 2:

Table S2. Reads per annotated ORF in 156M fragment data set before and after background subtraction.

Format: XLSX Size: 252KB Download file

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Additional file 3:

Figure S1. Correlation of coverage of the sense and antisense strands of annotated ORFs.

Format: TIFF Size: 1.5MB Download file

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