Additional file 8.
Representation of IGS sequences in 454 reads. The plots show number of similarity hits along (A) N. sylvestris and (B) N. tomentosiformis, obtained in BLASTN searches against 454 reads from N. sylvestris and N. tomentosiformis, respectively . The analysis was run using the PROFREP server (http://w3lamc.umbr.cas.cz/profrep/public/) with e-value cutoff of 1e-15. The curves were smoothed by value averaging in a 10-bp sliding window. Conversion of the hit numbers to genomic copy numbers (per 1C) based on genome coverage of the 454 sequencing is provided on the right side of the plots.
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Matyášek et al. BMC Genomics 2012 13:722 doi:10.1186/1471-2164-13-722