Table 3

TpA/ApT and (CpA + TpG)/(ApC + GpT) ratios for transposons in the genome of M. fijiensis
Transposon (Group) Number of sequences TpA/ApT value* (CpA + TpG)/(ApC + GpT) value*
Mutator 3 2.03 0.36
Mariner1 4 1.93 0.32
Mariner2 3 2.09 0.55
LTR-Copia 3 1.92 0.34
LTR-Gypsy1 7 2.07 0.27
LTR-Gypsy2 6 2.10 0.25
LTR-Gypsy3 11 2.06 0.23
LTR-Gypsy4 41 1.93 0.43

*Standard reference values of the RIP indices are: TpA/ApT > 0.89 and (CpA + TpG)/(ApC + GpT) < 1.03 [51].

Santana et al.

Santana et al. BMC Genomics 2012 13:720   doi:10.1186/1471-2164-13-720

Open Data