Table 2

Partial list of proteins upstream and downstream of the transposons
Scaffold Transposon Gene Approximate distance (bp) Identity (%) Similarity (%) Reference (GenBank)
1 LTR-Gypsy PX Domain D: 4,100 63 78 XP_001263638.1
1 LTR-Gypsy Glutaminase A U: 7,400 65 77 XP_001930459.1
1 LTR-Paste E2-ubiquitin D: 4900 72 78 XP_001593719.1
1 LTR-Gypsy Malate synthase D: 9,000 84 91 XP_001797883.1
1 LTR-Gypsy ABC transporter D: 5,500 70 83 XP_001727592.1
1 LTR-Gypsy Glutamate cysteine ligase D: 4,300 77 86 XP_001940223.1
1 LTR-Copia Serine/threonine kinase U: 790 64 77 XP_001819711.2
1 LTR-Gypsy NADPH-cytochrome P450 D: 3,950 51 68 XP_001818965.1
1 LTR-Gypsy MYND Domain D: 3,300 52 65 XP_750050.1
1 LTR-Gypsy 2-methylcitrate synthase U: 3,300 83 91 XP_965076.1
1 LTR-Gypsy WD40 Domain D: 4,500 61 71 XP_002372958.1
1 LTR-Gypsy Fructose-2,6-biphosphatase U: 4,800 73 83 XP_001546391.1
2 LTR-Gypsy Acetyl-CoA C-acyltransferase D: 7,000 70 81 XP_001392657.1
2 LTR-Gypsy Sugar transporter D: 900 57 73 XP_003069717.1
2 LTR-Gypsy Acetamidase D: 3,700 58 70 XP_001940983.1
2 LTR-Gypsy LaeA D: 3,100 50 68 XP_001827612.2
2 LTR-Gypsy Hsp70 D: 6,500 69 74 XP_001818154.2
2 LTR-Gypsy Chitin synthase U: 2,200 70 82 XP_003071333.1
2 LTR-Copia DNA helicase D: 1,700 54 66 XP_001824182.2
3 LTR-Gypsy ATP synthase U: 5,000 84 92 EFX00799.1
3 LTR-Gypsy Proteasome Activator Subunit4 D: 1,000 59 75 XP_751700.1
4 LTR-Gypsy Glucanase D: 3,400 60 78 XP_002624797.1
5 LTR-Gypsy Malate dehydrogenase D: 2,800 66 75 XP_001931613.1
5 LTR-Gypsy SNARE Domain U: 4,600 62 77 XP_001941286.1
6 LTR-Gypsy Aflatoxin B1 aldehyde reductase D: 8,000 59 79 XP_002845070.1
6 LTR-Gypsy Alcohol dehydrogenase U: 5,500 73 82 XP_001825083.1
7 LTR-Gypsy Gamma-glutamyl transpeptidase D: 6,800 65 78 XP_001933197.1
8 LTR-Gypsy Aspartate aminotransferase U: 1,000 70 77 XP_001933414.1
9 DNA-Mariner Ribose5-phosphate isomerase A D: 800 63 79 XP_003069185.1
9 LTR-Gypsy FAD Domain U: 1,000 64 79 XP_001263972.1
10 LTR-Gypsy MFS transporter U: 5,000 63 77 XP_749221.1
10 LTR-Gypsy Sucrose-6-phosphate hydrolase D: 9,000 56 73 XP_001936697.1
10 LTR-Gypsy Ribonuclease H1 D: 800 67 76 XP_001823167.2
10 LTR-Gypsy Phosphoglycerate mutase D: 7,000 65 78 ZP_08027076.1
14 LTR-Copia Histone H3 U: 100 70 84 XP_760063.1

D: downstream.

U: upstream.

Santana et al.

Santana et al. BMC Genomics 2012 13:720   doi:10.1186/1471-2164-13-720

Open Data