Open Access Highly Accessed Research article

Evolution of cis-regulatory elements in yeast de novo and duplicated new genes

Zing Tsung-Yeh Tsai123, Huai-Kuang Tsai24*, Jen-Hao Cheng2, Chih-Hsu Lin5, Yuan-Fan Tsai6 and Daryi Wang5*

Author Affiliations

1 Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, 115, Taiwan

2 Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan

3 Institute of Biomedical Informatics, National Yang-Ming University, Taipei, 112, Taiwan

4 Research Center for Information Technology Innovation, Academia Sinica, Taipei, 115, Taiwan

5 Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan

6 Department of Social and Regional Development, National Taipei University of Education, Taipei, 106, Taiwan

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BMC Genomics 2012, 13:717  doi:10.1186/1471-2164-13-717

Published: 21 December 2012

Additional files

Additional file 1:

Table S1. The lists of de novo genes, duplicated new genes, and orthologous genes used in this study.

Format: XLSX Size: 14KB Download file

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Additional file 2:

Supplemental Document. The document provides data and analysis in support of the main text, attempting to demonstrate that our findings are robust to various criteria of TFBS identifications.

Format: DOCX Size: 308KB Download file

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