Table 6

Differentially expressed candidate genes located within the Cia5a interval on rat chromosome 10*
Gene Symbol Gene name Entrez Gene ID Difference p-value§
Increased in DA Fold DA/Cia5a
Igsf7 immunoglobulin superfamily, member 7 287813 4.42 0.00008
Lgals3bp lectin, galactoside-binding, soluble, 3 binding protein 245955 3.85 0.000001
RGD1309310 similar to mKIAA0195 protein 303677 3.89 0.00001
Sectm1b secreted and transmembrane 1B 287884 7.61 0.00001
Slc16a3 solute carrier family 16, member 3 80878 5.36 0.000005
Sphk1 sphingosine kinase 1 170897 7.58 0.0000003
Increased in DA.F344(Cia5a) Fold Cia5a/DA
Itgb4 integrin beta 4 25724 2.85 0.0004
RGD1311422 similar to CG8841-PA 287822 2.57 0.002
RGD1561778 similar to dendritic cell-derived immunoglobulin(Ig)-like receptor 1, DIgR1 303666 2.77 0.002
Slc25a10 solute carrier family 25, member 10 170943 2.15 0.004
Expressed only or predominantly in DA Frequency DA:Cia5a
Cd300lf CD300 molecule-like family, member f 287818 6:0 0.0003
Fdxr ferredoxin reductase 79122 6:1 0.0047
Cd7 CD7 molecule 303747 6:0 0.0003
Sectm1a secreted and transmembrane 1A 287885 6:1 0.0047
Expressed only or predominantly in DA.F344(Cia5a)
Aanat arylalkylamine N-acetyltransferase 25120 0:7 0.0047
Hrnbp3 hexaribonucleotide binding protein 3 287847 1:6 0.1♯

*List contains the most signficantly differentially expressed genes; § t-test was used to compare means for fold-difference calculations and Fisher's Exact test to compare frequencies. #not statistically significant.

Brenner and Gulko

Brenner and Gulko BMC Genomics 2012 13:710   doi:10.1186/1471-2164-13-710

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