Table 2

Breakdown of taxonomic patterns of the KEGG modules
Pathway [203] Structural complex [263]
Major taxonomic pattern Number (%) Major taxonomic pattern Number (%)
Non-prokaryote 79 (38.9) Non-prokaryote 81 (30.8)
Prokaryote 52 (25.6) Bacteria-specific 45 (17.1)
Bacteria-specific 25 (12.3) Prokaryote 42 (16)
Gammaproteobacteria-specific 8 (3.9) Proteobacteria-specific 24 (9.1)
Euryarchaeota-specific 6 (3) Archaea-specific 10 (3.8)
Cyanobacteria-specific 4 (2) Cyanobacteria-specific 10 (3.8)
Proteobacteria-specific 4 (2) Firmicutes-specific 10 (3.8)
Alphaproteobacteria-specific 3 (1.5) Gammaproteobacteria-specific 8 (3)
Proteobacteria/Firmicutes/Actinobacteria 3 (1.5) Proteobacteria/Firmicutes 4 (1.5)
Archaea-specific 2 (1) Actinobacteria-specific 3 (1.1)
Chloroflexi-specific 2 (1) Alphaproteobacteria-specific 3 (1.1)
Crenarchaeota-specific 2 (1) Proteobacteria/Actinobacteria 3 (1.1)
Firmicutes-specific 2 (1) Gammaproteobacteria/Firmicutes/Fusobacteria 2 (0.8)
Actinobacteria-specific 1 (0.5) Actinobacteria/Verrucomicrobia/Nitrospirae 1 (0.4)
Betaproteobacteria-specific 1 (0.5) Betaproteobacteria-specific 1 (0.4)
Betaproteobacteria/Actinobascteria/ Cyanobacteria 1 (0.5) Euryarchaeota-specific 1 (0.4)
Betaproteobacteria/Chloroflexi 1 (0.5) Firmicutes/Actinobacteria 1 (0.4)
Cyanobacteria/Euryarchaeota 1 (0.5) Firmicutes/Fusobacteria 1 (0.4)
Cyanobacteria/Chlorobi 1 (0.5) Frmicutes-specific 1 (0.4)
Gammaproteobacteria/ Firmicutes/Cyanobacteria 1 (0.5) Gammaproteobacteria/Firmicutes 1 (0.4)
Proteobacteria/Actinobacteria 1 (0.5) Proteobacteria/Actinobacteria/Deonococcus-Thermus 1 (0.4)
Proteobacteria/Bacteroidetes 1 (0.5) Proteobacteria/Actinobacteria/Verrcomicrobia 1 (0.4)
Proteobacteria/Fusobacteria/ Gemmatimonadetes 1 (0.5) Proteobacteria/Chloroflexi/Deonococcus-Thermus 1 (0.4)
Proteobacteria/Firmicutes 1 (0.5) Proteobacteria/Chlamydiae/Chlorobi 1 (0.4)
Functional set [[4]] Proteobacteria/Chlamydiae 1 (0.4)
Major taxonomic pattern Number (%) Proteobacteria/Chrysiogenetes/Spirochaetes 1 (0.4)
Prokaryote 3 (75) Proteobacteria/Cyanobacteria 1 (0.4)
Non-prokaryote 1 (25) Proteobacteria/Cyanobacteria/Chlorobi 1 (0.4)
Signature [[3]] Proteobacteria/Firmicutes/Actinobacteria 1 (0.4)
Major taxonomic pattern Number (%) Proteobacteria/Magnetococcus 1 (0.4)
Proteobacteria-specific 1 (33.3) Proteobacteria/Magnetococcus/Aquificae 1 (0.4)
Betaproteobacteria-specific 1 (33.3)
Gammaproteobacteria-specific 1 (33.3)

[ ] shows total number of the KEGG modules containing branched modules.

Takami et al.

Takami et al. BMC Genomics 2012 13:699   doi:10.1186/1471-2164-13-699

Open Data