Additional file 1.

Tables S1–S7. Table S1. List of 768 prokaryotic species used in this study. The additional data are available with the online version of this paper. Table S2. Taxonomic patterns of the prokaryotes which complete the KEGG modules (205 pathways, 263 structural complexes, 4 functional sets, and 3 signatures). Functional annotation of each module is listed in Table S3-S5. Figures S1-S3 were drawn based on this table. Table S3. Characterization of the 205 KEGG pathway modules containing submodules based on the module completion patterns in 768 prokaryotic species. Table S4. Characterization of the 263 KEGG structural complex modules containing submodules based on the module completion patterns in 768 prokaryotic species. Table S5. Characterization of the 7 KEGG modules (4 functional sets and 3 signatures) based on the module completion patterns in 768 prokaryotic species. Table S6. Notations of Boolean algebra-like equations for all KEGG modules containing redefined ones. Table S7. Summary of metagenomic sequences of human gut microbiome.

Format: PDF Size: 2.4MB Download file

This file can be viewed with: Adobe Acrobat Reader

Takami et al. BMC Genomics 2012 13:699   doi:10.1186/1471-2164-13-699