Table 2

Classification with CBS of TF binding motifs that are enriched in promoters of 48 class III genes reported to be relevant for wing imaginal disc regeneration[51]
Rank Model Source Genes Genome P Value
1 AP1 BLS 14 838 0
2 TBP JASPAR 10 573 2.26e-12
3 V$TATA_01 TRANSFAC 10 573 1.55e-11
4 CrebA BLS 10 1007 1.21e-06
5 V$CDXA_01 TRANSFAC 30 5884 2.97e-06
6 V$AP1_C TRANSFAC 8 746 5.41e-06
7 V$AP1_Q2 TRANSFAC 8 704 7.93e-06
8 V$ELF1_Q6 TRANSFAC 5 358 1.46e-05
9 V$AP1_Q6 TRANSFAC 8 811 1.93e-05
10 I$GRH_01 TRANSFAC 13 1721 2.06e-05
11 TATA BLS 5 377 2.28e-05
12 V$USF_Q2 TRANSFAC 5 410 3.70e-05
13 V$AP1_Q4 TRANSFAC 6 551 4.96e-05
14 V$CDXA_02 TRANSFAC 32 7214 6.85e-05
15 V$STAT5A_04 TRANSFAC 29 6281 8.48e-05
16 GATA2 JASPAR 33 7698 1.10e-04
17 V$PAX2_02 TRANSFAC 29 6446 1.61e-04
18 V$TBP_Q6 TRANSFAC 24 5032 2.53e-04
19 ct JASPAR 19 3562 3.92e-04
20 V$GATA1_05 TRANSFAC 7 803 4.51e-04

For each predictive model, the following attributes are shown: rank, name of the model, regulatory catalog, gene promoters in which such a motif is detected, number of gene promoters in the whole genome in which the same motif is identified under the same constraints, and P value. Here we show only the best 20 motifs reported by CBS (see http://compfly.bio.ub.es/CBS/listTF_CBS.php webcite for further details on each predictive model).

Blanco and Corominas

Blanco and Corominas BMC Genomics 2012 13:688   doi:10.1186/1471-2164-13-688

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