Table 1

Summary of data sources integrated into CBS
Information Source Reference
D. melanogaster genome (BDGP R5/dm3) UCSC Genome browser [21]
D. melanogaster gene catalog FlyBase [36]
D. melanogaster gene catalog RefSeq [45]
D. melanogaster gene catalog NCBI Entrez [55]
Predictive models JASPAR [25]
Predictive models TRANSFAC [26]
H3K4Me1 ChIP-Seq profile modENCODE [35,50]
H3K4Me3 ChIP-Seq profile modENCODE [35,50]
H3K27Ac ChIP-Seq profile modENCODE [35,50]
H3K27Me3 ChIP-Seq profile modENCODE [35,50]
Conservation scores UCSC Genome browser [21]
Experimentally validated CRMs REDfly [39]
BLS predictions BLS [6]
D. ananassae genome UCSC Genome browser [21]
D. erecta genome UCSC Genome browser [21]
D. grimshawi genome UCSC Genome browser [21]
D. mojavensis genome UCSC Genome browser [21]
D. persimilis genome UCSC Genome browser [21]
D. pseudoobscura genome UCSC Genome browser [21]
D. sechelia genome UCSC Genome browser [21]
D. simulans genome UCSC Genome browser [21]
D. virilis genome UCSC Genome browser [21]
D. yakuba genome UCSC Genome browser [21]
Pairwise comparisons UCSC / RefSeq [21,45]

Blanco and Corominas

Blanco and Corominas BMC Genomics 2012 13:688   doi:10.1186/1471-2164-13-688

Open Data