Table 2

TF genes that were unaffected by BPH and those that showed constitutive differential expression in RHT (FC>10, P<0.05)
No Family Gene ID R0/T0 R8/T8 R24/T24
FC RP FC RP FC RP
1 bHLH Os01g0108400 60.02 U 30.02 U 59.83 U
2 MYB-related Os07g0634900 584.50 U 1219.35 U 216.66 U
3 C3H Os01g0192000 24.32 U 25.73 U 25.62 U
4 FAR1 Os05g0128700 20.44 D 106.39 D 29.94 D
5 FAR1 Os04g0316800 10.96 D 12.35 D 17.78 D
6 GNAT Os08g0260000 9.35 D 9.66 D 12.28 D
7 MADS Os08g0112700 9.61 U 37.64 U 23.08 U
8 MADS Os04g0387500 12.88 D 41.15 D 13.56 D
9 mTERF Os06g0224400 7.50 D 6.11 D 23.84 D
10 GNAT Os02g0806000 14.71 U 21.75 U 19.65 U
11 Orphans Os01g0530300 6.53 U 5.20 U 50.91 U
12 TRAF Os03g0667100 223.89 D 118.10 D 110.88 D
13 TRAF Os08g0227200 21.53 U 33.62 U 17.75 U
14 bHLH Os04g0301500 5.53 D 13.20 D 2.85 D
15 bZIP Os01g0859500 10.39 D 6.31 D 1.17 U
16 FAR1 Os08g0389800 25.22 U 4.59 U 1.56 U
17 FAR1 Os06g0246700 10.18 D 1.50 U 1.35 U
18 Orphans LOC_Os04g13480.1 25.93 U 1.16 D 3.73 U
19 Tify Os09g0439200 4.82 U 7.20 U 30.32 U
20 TRAF LOC_Os08g41240.1 4.41 D 3.97 D 10.30 D
21 MYB Os02g0624300 2.17 D 11.48 D 4.38 D
22 ARF Os04g0664400 1.99 U 14.99 D 4.05 U
23 NAC Os01g0339500 1.70 D 1.64 U 10.83 D
24 SET Os08g0244400 1.92 U 18.66 U 8.11 U
25 TCP Os03g0706500 1.36 D 11.25 D 2.18 U
26 Tify Os04g0395800 1.10 U 14.08 D 1.20 D

* T0 and R0 refer to rice cultivars TN1 and RHT before attack by BPH (0 h); T8, T24, R8, and R24 refer to the same cultivars sampled 8 or 24 h after attack by BPH; FC, fold change; RP, regulation pattern; U, up-regulation; D, down-regulation.

Wang et al.

Wang et al. BMC Genomics 2012 13:687   doi:10.1186/1471-2164-13-687

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