Mapping characteristics of Illumina reads of eight flax genotypes in 0.5 Mbp bins of the concatenated CDC Bethune whole genome shotgun sequence assembly. (A) Heat map distribution of mapping coverage percentage (MCP) and (B) average mapped read depth (MRD). The heat maps were generated using an in-house Java based program. (C) Relationship of sequence genome coverage (X; genome equivalent) with MCP and average MRD (BT-CDC Bethune, MB-Macbeth, SP-SP2047, UG-UGG5-5, DL-Double Low, CT-Crepitam Tabor, G11-G-1186/94, AT-Atlas).
Kumar et al. BMC Genomics 2012 13:684 doi:10.1186/1471-2164-13-684