Additional file 4.

Supplemental comparison of defining allele-specific SNPs as SNPs that have RNA-seq exonic ASE SNPs in their 1kb neighborhood. Supplemental Figure 3 — ROC curves for GM12878 using Caltech Exonic RNA-seq ASE SNPs as gold standard. Supplemental Figure 4 — ROC curves for GM12878 using Caltech autosomal exonic RNA-seq ASE SNPs as gold standard. Supplemental Figure 5 — ROC curves for GM12878 using Yale Exonic RNA-seq ASE SNPs as gold standard. Supplemental Figure 6 — ROC curves for GM12878 using Yale autosomal exonic RNA-seq ASE SNPs as gold standard. Supplemental Table 4 — Comparison of iASeq and AlleleSeq using Caltech RNA-seq exonic ASE SNPs as gold standard. Supplemental Table 5 — Comparison of iASeq and AlleleSeq using Yale RNA-seq exonic ASE SNPs as gold standard.

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Wei et al. BMC Genomics 2012 13:681   doi:10.1186/1471-2164-13-681