Open Access Highly Accessed Research article

Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features

Joo-Hyun Seo1, Jay Sung-Joong Hong13, Donghyuk Kim1, Byung-Kwan Cho14, Tzu-Wen Huang12, Shih-Feng Tsai2, Bernhard O Palsson1 and Pep Charusanti1*

Author Affiliations

1 Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA

2 Institute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli, 350, Taiwan

3 Current address: Central Research Institute, Samsung Petrochemical, Samsung Advanced Institute of Technology, 6th floor, Building 2, Nongseo-dong, Giheung-gu, Yongin, Gyeonggi-do, 446-712, Republic of Korea

4 Current address: Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon, 305-701, Korea

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BMC Genomics 2012, 13:679  doi:10.1186/1471-2164-13-679

Published: 29 November 2012

Additional files

Additional file 1:

List of all RTSs detected during this study.

Format: XLSX Size: 228KB Download file

Open Data

Additional file 2:

RTSs containing more than one TSS.

Format: XLSX Size: 22KB Download file

Open Data

Additional file 3:

List of putative sRNAs.

Format: XLSX Size: 11KB Download file

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Additional file 4:

List of putative ORFs.

Format: XLSX Size: 26KB Download file

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Additional file 5:

List of antisense transcripts.

Format: XLSX Size: 23KB Download file

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Additional file 6:

Expression level differences between exponential versus stationary phase for the five sigma factors and known virulence genes.

Format: XLSX Size: 25KB Download file

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Additional file 7:

RTS and chIP-chip data for known virulence genes.

Format: XLSX Size: 21KB Download file

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Additional file 8:

List of all RNAP binding sites and their associated RTSs.

Format: XLSX Size: 110KB Download file

Open Data

Additional file 9:

List of all RpoD binding sites and their associated RTSs.

Format: XLSX Size: 98KB Download file

Open Data

Additional file 10:

List of all RpoS binding sites and their associated RTSs.

Format: XLSX Size: 98KB Download file

Open Data