Table 1

SNP in protein-coding genes of mtDNA between oguC and nap
Gene Nucleic acida Amimo acidb Mutation typec SNP type
nad1 571 C-T 191 L-F N transition
nad2 367 T-C 123 C-R N transition
nad3 265 T-C S transition
nad4 77 C-T 26 P-L N transition
1205 C-T 402 P-L N transition
nad7 1079 T-C 360 F-S N transition
cox1* 109 C-T S transition
111 T-A S transversion
786 T-G S transversion
cox2-1 379 T-C 127 W-R N transition
ccmB 353 G-A N transition
ccmC** 126 A-G S transition
155 G-A 52 R-H N transition
338 G-A 113 R-K N transition
351 G-A S transition
476 C-A S transversion
533 G-A 178 G-A N transition
551 G-A 184 G-D N transition
ccmFC 283 G-A 95 E-K N transition
ccmFN1 361 T-A 121 F-I N transversion
1000 C-T 334 L-F N transition
ccmFN2 380 C-T 127 L-S N trnasition
atp1 987 T-C S transition
atp4 176 C-T 59 A-V N transition
atp8* 370 A-C 124 L-I N transversion
448 T-C 150 A-V N transition
atp9 64 A-G 22 I-V N transition
rps3 1254 A-C S transversion
1320 A-C S transversion
rps4 189 T-G S transversion
776 C-T 259 S-F N transition
rps12* 12 T-G 4 F-L N transversion
336 A-C 112 R-S N transversion
345 A-C S transversion
rpl2 464 G-A 155 G-D N transition
840 C-T S transition
1004 C-T 335 S-L N transition
rpl5 515 T-C 172 L-P N transition
rpl16 506 C-T 169 P-L N transition

a Location of base mutation, bLocation and switch of amino acid mutation, c S,Synonymous; N, Non-synonymous.

* Nucleotide sequence of genes identical to Raphanus sativus ** Two SNPs when compared to Raphanus sativus.

Wang et al.

Wang et al. BMC Genomics 2012 13:675   doi:10.1186/1471-2164-13-675

Open Data