Table 4

Candidate genes involved in transmission phenotype segregated by polymorphisms and differential transcription
Category FL1 St.M1 Product SNPs candidate SNPs SNP location Homologs2 BI3
Differentially transcribed genes AMF_433 AM579 Hypothetical protein 1 0 Gene AP, ER, ECh TM
AMF_432 AM579 Hypothetical protein 1 0 Gene AP, ER, ECh, ECa -
AMF_431 AM580 Hypothetical protein 3 0 Gene AP, ER, ECh, ECa TM
AMF_430 AM576 Hypothetical protein 22 0 Gene AP, ER, ECh, ECa TM/DS
AMF_429 AM574 Hypothetical protein 15 0 Gene AP, ER, ECh TM
AMF_798 AM1055 Hypothetical protein 9 0 Gene AP, ER, ECh, ECa TM/SP
AMF_879 AM1165 Hypothetical protein 14 0 Gene - TM
AMF_878 AM1164 Outer membrane protein 4 2 0 Gene AP TM/SP
AMF_401 AM540 Hypothetical protein 12 0 Gene/Prom - TM
AMF_258 AM347 Hypothetical protein 19 0 Gene AP TM
Differentially transcribed genes w/SNPs genescarrying candidate SNPs AMF_474 AM632 Ribosome-associated inhibitor A 1 1 Promoter ER, ECh, ECa -
AMF_553 AM748 NADH Dehydrogenase I chain J 1 1 Promoter AP, ER, ECh, ECa TM
AMF_793 AM1048 Hypothetical protein 77 2 Gene/Prom AP, ER, ECh, ECa TM/SP
AMF_1026 AM1352 Hypothetical protein 18 5 Gene/Prom AP, ER, ECh TM/DS
Genes carrying candidate SNPs AMF_051 AM071 Hypothetical protein 5 1 Gene AP, ER, ECh, ECa TM
AMF_197 AM265 Hypothetical protein 19 1 Gene AP, RB TM
AMF_264 AM354 Hypothetical protein 21 2 Gene ER, ECh, ECa TM/DS
AMF_265 AM356 Hypothetical protein 65 1 Gene AP -
AMF_269 AM368 Hypothetical protein 43 1 Gene RB TM/DS
AMF_480 AM644 DNA gyrase B 14 1 Gene AP, ER, ECh, ECa, RB, RC, RR TM
AMF_530 AM712 Hypothetical protein 138 1 Gene - TM
AMF_518 AM689 Hypothetical protein 20 1 Gene AP -
AMF_547 AM742 Hypothetical protein 1 1 Gene AP, ER, ECh, ECa DS
AMF_613 AM823 Hypothetical protein 17 4 Gene AP, ER, ECh, ECa -
AMF_703 AM919 Hypothetical protein 1 1 Gene AP, ER, ECh, ECa, RB, RC, RR TM
AMF_762 AM1001 methionyl-tRNA synthetase 23 1 Gene AP, ER, ECh, ECa, RB, RC, RR TM/DS
AMF_764 AM1005 aspartokinase 13 1 Gene AP, ER, ECh, ECa TM/DS
AMF_824 AM1091 D-Ala-D-Ala carboxypeptidase 33 6 Gene AP, ER, ECh, ECa, RB, RC, RR TM/SP
AMF_893 AM1183 lipoprotein-releasing transmembrane protein 8 3 Gene ER, ECh, ECa TM/DS
AMF_1037 AM345 Hypothetical protein 4 1 Gene - -

1FL: Locus tag in the Florida strain St.M: locus tag in the St. Maries strain.

2AP: Anaplasma phagocytophilum, ER: Ehrlichia ruminantium, ECh: Ehrlichia chaffeensis, ECa: Ehrlichia canis, RB: Rickettsia bellii, RC: Rickettsia conorii, RR: Rickettsia rickettsia.

3BI: Bioinformatics TM: Transmembrane domain, SP: Signal peptide, Prom: promoter, DS: Deleterious substitution.

Pierlé et al.

PierlĂ© et al. BMC Genomics 2012 13:669   doi:10.1186/1471-2164-13-669

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