Table 3

SB and GATK-SB difference
Chr Pos a1 b2 c3 d4 SB GATK-SB Fisher Genotype GATK Genotype GWAS
7 43917013 11 2 20 0 2.54 0.16 0.85 AG AA
14 95923670 16 2 10 0 1.56 0.12 0.48 CT TT
19 57088850 8 2 16 0 2.6 0.21 0.86 AC AA

1. Forward strand reference allele.

2. Forward strand non reference allele.

3. Reverse strand reference allele.

4. Reverse strand non reference allele.

Guo et al.

Guo et al. BMC Genomics 2012 13:666   doi:10.1186/1471-2164-13-666

Open Data