Open Access Research article

Transcriptome characterization and gene expression of Epinephelus spp in endoplasmic reticulum stress-related pathway during betanodavirus infection in vitro

Ming-Wei Lu12*, Fang-Huar Ngou1, Yung-Mei Chao3, Yu-Shen Lai4, Nai-Yu Chen5, Fan-Yao Lee5 and Pinwen P Chiou5*

Author Affiliations

1 Department of Aquaculture, National Taiwan Ocean University, Keelung, Taiwan

2 Center of Excellence for Marine Bioenvironment and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan

3 Institute of Basic Medical Science, National Cheng Kung University, Tainan, Taiwan

4 Institute of Biotechnology, National Ilan University, Yilan, Taiwan

5 Marine Research Station, Institute of Cellular and Organismic Biology, Academia Sinica, Yilan, Taiwan

For all author emails, please log on.

BMC Genomics 2012, 13:651  doi:10.1186/1471-2164-13-651

Published: 21 November 2012

Additional files

Additional file 1:

Figure S1. Histogram of gene ontology (GO) classification. Among the 66,582 unigenes, 76,975 unigenes were classified into the 51 sub-categories under the three categories of GO: molecular function, cellular component and biological process.

Format: PDF Size: 312KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Figure S2. Histogram of clusters of orthologous groups (COG) functional classification. Out of the 66,582 unigenes, 19,261 unigenes were grouped into the 25 COG catagories. The largest group in COG is ‘General function prediction only’ (3673, 19.07%), followed by group ‘Transcription’ (1708, 8.87%) and group ‘Replication, recombination and repair’ (1680, 8.72%).

Format: PDF Size: 146KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Table S1. Real-time PCR primers.

Format: DOC Size: 26KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data