Table 4

Functional categorization of significantly regulated genes in the oocysts upon UV irradiation
Group 0.5 h Up Up Up Mid Mid Mid Down Down Down No. Total % Total
Group 5.0 h Up Mid Down Up Mid Down Up Mid Down
Cluster 1 2 3 4 5 6 7 8 9
Enzyme 2 25 0 15 149 16 0 19 1 227 12.24
RNA metabolism 0 18 0 2 65 2 0 8 3 98 5.28
Gene expression 0 9 1 1 57 1 0 10 1 80 4.31
Ribosome biogenesis 0 7 0 0 74 0 0 7 4 92 4.96
Transporter 0 15 0 3 44 3 0 6 0 71 3.83
Membrane 0 6 0 1 24 3 0 4 0 38 2.05
DNA metabolism 2 9 0 0 33 1 0 2 0 47 2.53
Protein degradation 0 2 0 6 32 0 1 3 0 44 2.37
Structure 2 4 0 0 16 2 0 1 0 25 1.35
Chaperonin 1 2 0 2 18 2 0 2 0 27 1.46
Cell cycle 0 5 0 1 7 0 0 1 0 14 0.75
Chromatin 1 4 0 0 12 0 0 0 0 17 0.92
Redox homeostasis 0 2 0 0 12 1 0 1 0 16 0.86
Mitochondrial 0 4 0 0 5 0 0 1 1 11 0.59
General 0 0 0 1 2 0 0 1 0 4 0.22
Total annotatable 8 112 1 32 550 31 1 66 10 811 43.72
Unknown function 23 124 5 68 633 46 10 118 17 1044 56.28
Grand Total 31 236 6 100 1183 77 11 184 27 1855 100.00

Note: Up = up-regulated (fold changes >1.2), Mid = less significantly regulated “middle” group (fold changes between 0.8 to 1.2), Down = down-regulated (fold changes <0.8).

Zhang et al.

Zhang et al. BMC Genomics 2012 13:647   doi:10.1186/1471-2164-13-647

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