Open Access Research article

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

Arwa Shahin1, Martijn van Kaauwen1, Danny Esselink1, Joachim W Bargsten123, Jaap M van Tuyl1, Richard GF Visser1 and Paul Arens1*

Author Affiliations

1 Wageningen UR Plant Breeding, Wageningen University and Research Centre, P.O. Box 386, Wageningen, 6700 AJ, The Netherlands

2 Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, The Netherlands

3 Applied Bioinformatics, Plant Research International, PO Box 619, Wageningen, 6700 AP, The Netherlands

For all author emails, please log on.

BMC Genomics 2012, 13:640  doi:10.1186/1471-2164-13-640

Published: 20 November 2012

Additional files

Additional file 1:

Gene annotation and gene ontology for the lily contigs generated by blasting contigs to the nr genebank with a threshold of 1E-15 using Blast2go software. GO terms: F stands for molecular function, P for biological process, and C for cellular compound.

Format: XLSX Size: 2.3MB Download file

Open Data

Additional file 2:

Gene annotation and gene ontology for the tulip contigs generated by blasting contigs to the nr genebank with a threshold of 1E-15 using Blast2go software. GO terms: F stands for molecular function, P for biological process, and C for cellular compound.

Format: XLSX Size: 2MB Download file

Open Data

Additional file 3:

Gene annotation and gene ontology for the orthologous groups between lily, tulip, and rice generated by blasting contigs to the nr genebank with a threshold of 1E-15 using Blast2go software. GO terms: F stands for molecular function, P for biological process, and C for cellular compound.

Format: XLSX Size: 5.5MB Download file

Open Data