A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)
1 The New Zealand Institute for Plant & Food Research Limited, Private Bag 4704, Christchurch, New Zealand
2 Department of Applied Computing, Faculty of Environment, Society and Design, Lincoln University, PO Box 84, Lincoln, 7647, New Zealand
3 Biochemistry Department, University of Otago, P.O. Box 56, Dunedin, 9054, New Zealand
BMC Genomics 2012, 13:637 doi:10.1186/1471-2164-13-637Published: 19 November 2012
Additional file 1:
Table S1. Genetic Marker assays and map locations. Genbank accessions denote accession number of contigs or read identifier for singleton reads in SRA accession SRX031645.
Format: XLSX Size: 24KB Download file
Additional file 2:
Table S2. Bin mapped genetic marker assays targeting TF-like sequences and genomic SSR.
Format: XLSX Size: 10KB Download file