Open Access Highly Accessed Research article

Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes

Feng-Jiau Lin1, Yuan Liu2, Zhongli Sha2, Ling Ming Tsang3, Ka Hou Chu3, Tin-Yam Chan4, Ruiyu Liu2 and Zhaoxia Cui2*

Author Affiliations

1 Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan

2 EMBL, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China

3 Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong

4 Institute of Marine Biology and Center of Excellence for Marine Bioenvironment and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan

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BMC Genomics 2012, 13:631  doi:10.1186/1471-2164-13-631

Published: 16 November 2012

Additional files

Additional file 1:

Genomic characteristics of decapod mitochondrial genomes.

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Additional file 2:

Location of genes in the mitochondrial genome of Austinogebia edulis.

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Additional file 3:

Location of genes in the mitochondrial genome of Upogebia major.

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Additional file 4:

Location of genes in the mitochondrial genome of Thalassina kelanang.

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Additional file 5:

Location of genes in the mitochondrial genome of Neaxius glyptocercus.

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Additional file 6:

Location of genes in the mitochondrial genome of Nihonotrypaea thermophilus.

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Additional file 7:

Mitochondrial gene order rearrangement scenario of Austinogebia edulis, Upogebia major (Decapoda: Gebiidea) inferred by CREx. The elements in the blue shaded boxes are lost in the second copy, therefore the remaining copies are moved to the front. The elements in the red shaded boxes are lost in the first copy, therefore the remaining copies are moved to the back.

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Additional file 8:

Mitochondrial gene order rearrangement scenario of Neaxius glyptocercus and Nihonotrypaea thermophilus (Decapoda: Axiidea) inferred by CREx. The elements in the blue shaded boxes are lost in the second copy, therefore the remaining copies are moved to the front. The elements in the red shaded boxes are lost in the first copy, therefore the remaining copies are moved to the back.

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Additional file 9:

Specific primers used in amplification of Austinogebia edulis and Upogebia major mitochondrial genomes.

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Additional file 10:

Specific primers used to amplification of the fragments which covered the gaps after sequencingThalassina kelanang, Neaxius glyptocercus and Nihonotrypaea thermophilus mitochondrial genomes.

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