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Open Access Database

Medicago truncatula transporter database: a comprehensive database resource for M. truncatula transporters

Zhenyan Miao1, Daofeng Li1, Zhenhai Zhang2, Jiangli Dong1, Zhen Su2* and Tao Wang1*

Author Affiliations

1 State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China

2 State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China

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BMC Genomics 2012, 13:60  doi:10.1186/1471-2164-13-60

Published: 6 February 2012

Additional files

Additional file 1:

MySQL database structure model for the Medicago truncatula transporter database. We use MySQL 4.1 to store our data set.

Format: PNG Size: 23KB Download file

Open Data

Additional file 2:

Phylogenetic tree analysis of the MIP family. This figure shows the result of phylogenetic tree analysis of MIP, one example of the 162 families in the Medicago truncatula transporter database. Individual members of the MIP family were further clustered and color-coded based on the result of phylogenetic analysis and TC numbering system. As observed in Arabidopsis, M. truncatula MIPs also can be classified into four groups: NIP, SIP, PIP, and TIP. Green markers refer to Arabidopsis thaliana sequences. Red markers refer to M. truncatula sequences.

Format: TIFF Size: 16.5MB Download file

Open Data

Additional file 3:

Distribution map of transporters. The distribution map presents the locations of transporter genes. Genes are represented by squares and color-coded according to their types. Clicking any block will redirect to the corresponding individual protein page.

Format: JPEG Size: 795KB Download file

Open Data