|Reciprocal BLAST comparison between catfish and five model fish with sequenced genome|
|Species||#Total proteins||#Protein coding genes||#Proteins have hits in catfish||#Genes have hits in catfish||#Unique protein hits by catfish||#Unique gene hits by catfish|
First, protein sequences of five model fish in Ensembl database were searched against catfish contigs using TBLASTN to assess the extent of reference sequences that were observed in catfish; reciprocally, all catfish contigs were searched against protein sequences of five model fish using BLASTX to assess the number of genes represented by the catfish sequences when compared to those in each of the five species.
Liu et al.
Liu et al. BMC Genomics 2012 13:595 doi:10.1186/1471-2164-13-595