|Summary of assemblies generated using various de novo assemblers|
|Assemblies*||No. of contigs ≥200bp||No. of contigs with length ≥N50||No. of contigs with length ≥1kb||Avg. contig length (bp)||N50 (bp)||Total size (Mbp)|
*CLC denotes the assembly generated by CLC Genomics Workbench, ABySS denotes the assembly generated by ABySS with multiple k-mers and merged by running the first stage of Trans-ABySS pipeline, Velvet denotes the assembly generated by Velvet with multiple k-mers and merged by running the first stage of Trans-ABySS pipeline, and Final merged denotes the final assembly generated by combining the three sets of assembly and retain only one of longest contigs for the ones assembled by more than one assemblers.
Liu et al.
Liu et al. BMC Genomics 2012 13:595 doi:10.1186/1471-2164-13-595