Table 1

Summary of data generated for catfish transcriptome using Illumina Hiseq 2000 sequencing
Sequencing No. of tissues* No. of raw reads Read length (bp) No. of reads after trim Avg. length after trim (bp) No. of bases after trim (Gbp)
s_4_1_1 19 49,077,054 100 48,743,295 92.8 4.5
s_4_1 19 128,862,236 100 124,882,873 87.6 10.9
s_5_1 19 137,764,408 100 133,926,741 87.1 11.7
Total - 315,703,698 100 307,552,909 88.0 27.1

*Sequencing was conducted using the total RNA isolated from nineteen tissues of a doubled haploid channel catfish. Tissues include head kidney, fin, pancreas, spleen, gill, brain, trunk kidney, adipose, liver, stomach, gall bladder, ovary, intestine, thymus, skin, eye, swim bladder, muscle, and heart.

Liu et al.

Liu et al. BMC Genomics 2012 13:595   doi:10.1186/1471-2164-13-595

Open Data