Table 1

Significant SNPs (P<5.0E-07), their chromosome positions and their closest genes in Sscrofa10.2 (Pre-Ensembl)
SNP CHR:position1(Sscrofa10.2) CHR:position1(Sscrofa10) CHR:position1(Sscrofa9.2) P2 FDR3 SNP position/distance4 Closest gene coordinates Closest gene protein in Pre-Ensembl Gene symbol
ALGA0098168 18:45408799 18:44540120 18:25516667 3.07E-11 1.51E-06 Intron 3 18:45404849-45567252 ENSSSCP00000017656 PDE1C
M1GA0010276 7:50272760 7:50024255 7:50440974 1.45E-8 3.58E-04 3657 7:50276417-50297466 ENSSSCP00000001892 CRISP1
ALGA0109557 15:107079255 15:102388547 - 3.81E-7 4.17E-3 4609542 15:102429318-102469713 ENSP00000351255 STAT4
ALGA0069549 13:37851945 13:37353675 13:23719928 3.87E-7 4.17E-3 20143 13:37872088-37876725 ENSSSCP00000012196 STAB1

1Chromosome and nucleotide position in the different genome versions.

2P-raw value.

3False Discovery Rate.

4Localization of the SNP in the corresponding gene or distance from the closest gene (in bp).

Fontanesi et al.

Fontanesi et al. BMC Genomics 2012 13:583   doi:10.1186/1471-2164-13-583

Open Data