Open Access Highly Accessed Research article

Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

Marie Couturier1, David Navarro12, Caroline Olivé1, Didier Chevret3, Mireille Haon12, Anne Favel124, Laurence Lesage-Meessen12, Bernard Henrissat5, Pedro M Coutinho45 and Jean-Guy Berrin1*

Author Affiliations

1 INRA, UMR1163 BCF, 13288 Marseille, France

2 INRA, UMR1163 CIRM-CF, 13288 Marseille, France

3 INRA, UMR1319 Micalis, PAPPSO, 78352 Jouy-en-Josas, France

4 Aix-Marseille Universités, 13288 Marseille, France

5 CNRS, UMR6098 AFMB, 13288 Marseille, France

For all author emails, please log on.

BMC Genomics 2012, 13:57  doi:10.1186/1471-2164-13-57

Published: 2 February 2012

Additional files

Additional file 1:

Activity profiling of fungal secretomes. The file contains a table with enzymatic activities (mU/mg) that were obtained using pNP-based substrates and complex substrates as described in materials and methods. Values are means of triplicate independent measures.

Format: DOC Size: 92KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 2:

List of proteins confidently identified in the T. reesei CL847 enzymatic cocktail and the secretome of A. niger, A. nidulans and U. maydis using 1D LC-MS/MS analyses. The file contains an Excel table that includes SDS-Page of the T. reesei CL847 enzymatic cocktail and the secretome of A. niger, A. nidulans and U. maydis and a list of the proteins that have been confidently identified in the four samples using 1D LC-MS/MS analyses and annotation of putative function. For CAZymes (GH and PL) and CBM, families are indicated.

Format: XLS Size: 3.8MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Detailed list of the mass data of peptides identified in the T. reesei CL847 enzymatic cocktail using 1D LC-MS/MS analyses. The file contains an Excel table with data of peptides identified

Format: XLS Size: 1.1MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Detailed list of the mass data of peptides identified in the A. niger secretome using 1D LC-MS/MS analyses. The file contains an Excel table with data of peptides identified

Format: XLS Size: 4.1MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Detailed list of the mass data of peptides identified in the A. nidulans secretome using 1D LC-MS/MS analyses. The file contains an Excel table with data of peptides identified

Format: XLS Size: 655KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Detailed list of the mass data of peptides identified in the U. maydis secretome using 1D LC-MS/MS analyses. The file contains an Excel table with data of peptides identified

Format: XLS Size: 1.9MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data