Table 3

Accessory regions identified among S. pneumoniae isolates
Accessory Region TIGR4 locus Gene annotation
AR1 SP0482 hypothetical protein
SP0483 ABC transporter, ATP-binding protein
SP0484 hypothetical protein
AR2 SP1050 transcriptional regulator, putative
SP1051 hypothetical protein
SP1052 phosphoesterase, putative
AR3 SP1062 ABC transporter, ATP-binding protein
SP1063 ABC-2 transporter, permease protein, putative
SP1064 transposase, IS200 family
AR4 SP1129 integrase/recombinase, phage integrase family
SP1130 transcriptional regulator
SP1131 transcriptional regulator, putative
AR5 SP1134 hypothetical protein
SP1135 hypothetical protein
SP1136 hypothetical protein
SP1137 GTP-binding protein, putative
AR6 SP1315 V-type ATP synthase subunit D
SP1316 V-type ATP synthase subunit B
SP1317 V-type ATP synthase subunit A
SP1318 V-type ATP synthase subunit F
SP1319 V-type sodium ATP synthase, subunit C
SP1320 V-type sodium ATP synthase, subunit E
SP1321 V-type ATP synthase subunit K
SP1322 V-type ATP synthase subunit I
SP1323 hypothetical protein
SP1324 ROK family protein
SP1325 oxidoreductase, Gfo/Idh/MocA family
SP1326 neuraminidase, putative
SP1327 hypothetical protein
SP1328 sodium: solute symporter family protein
SP1329 N-acetylneuraminate lyase
SP1330 N-acetylmannosamine-6-phosphate 2-epimerase
SP1331 phosphosugar-binding transcriptional regulator, putative
AR7 SP1341 ABC transporter, ATP-binding protein
SP1342 toxin secretion ABC transporter, ATP-binding/permease protein
SP1343* prolyl oligopeptidase family protein
SP1344* hypothetical protein
AR8 SP1433 transcriptional regulator, AraC family
SP1434* ABC transporter, ATP-binding/permease protein
SP1435 ABC transporter, ATP-binding protein
SP1436 hypothetical protein
AR8 SP1437 hypothetical protein
SP1438 ABC transporter, ATP-binding protein
AR9 SP1616 allulose-6-phosphate 3-epimerase
SP1617 PTS system, IIC component
SP1618 PTS system, IIB component
SP1619 PTS system, IIA component
SP1620 PTS system, nitrogen regulatory component IIA
SP1621 putative transcription anti terminator BglG family protein
SP1622 transposase, IS200 family
AR10 SP1738 guanylate kinase
SP1739 hypothetical protein
SP1740 hypothetical protein
AR11 SP1856* transcriptional regulator, MerR family
SP1857 cation efflux system protein
SP1858 transcriptional regulator, TetR family
SP1859* transporter, putative
SP1860 choline transporter
AR12 SP1896* sugar ABC transporter, permease protein
SP1897 sugar ABC transporter, sugar-binding protein
SP1898* alpha-galactosidase
AR13 SP2159 fucolectin-related protein
SP2160 hypothetical protein
SP2161 PTS system, IID component
SP2162 PTS system, IIC component
SP2163 PTS system, IIB component

* contain virulence genes identified by signature tagged mutagenesis [41].

Donkor et al.

Donkor et al. BMC Genomics 2012 13:569   doi:10.1186/1471-2164-13-569

Open Data