Additional file 8.
Table S5. Main characteristics of the putative small ORF identified from RNA-seq experiment. Column (B): locus tag; column (C): localization on chr. 1 (1), chr. 2 (2) or plasmid; column (D): position; column (E): predicted protein size in AAs; column (F): strand; column (G): ribosome binding site predicted using MotifScanner (see materials and methods) is reported in red color and separated from start codon (in red) from black colored bases; column (H): RBS score calculated using MotifScanner software; column (I): BLASTp results obtained considering complete microbial genomes database (NCBI); column (J): gene name based on BLASTp similarity search; column (K): gene description based on BLASTp search versus complete microbial genomes and NR database; column (L): software (if any) confirming the ORF identified using RNA-seq; columns (M-N-O): COG prediction performed using COGnitior software (http://www.ncbi.nlm.nih.gov/COG/old/xognitor.html).
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Campanaro et al. BMC Genomics 2012 13:567 doi:10.1186/1471-2164-13-567