Additional file 20.Table S14. Putative ToxR regulated genes. Column (A): locus tag; column (B): Swiss-prot ID; column (C): gene name; column (D): gene description downloaded from NCBI database; column (E): gene description obtained from CMR (Comprehensive Microbial Resource) (http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi); columns (F-G): COG code and COG ID; columns (H, I, J, K): chromosome, strand, start and stop position of the genes; columns (L, M, N, O): number of reads mapped on each gene in the four experiments (DB110 at 28 MPa, DB110 at 0.1 MPa, TW30 at 28 MPa and TW30 at 0.1 MPa). All values are normalized considering the total number of reads mapped on the reference sample (DB110 at 28 MPa); columns (P, Q): log_{2} ratios and p-values calculated using DEGseq software for the comparison between DB110 at 0.1 MPa and DB110 at 28 MPa; columns (R, S): log_{2} ratios and p-values calculated using DEGseq software for the comparison between TW30 at 28 MPa and DB110 at 28 MPa; columns (T, U): log_{2} ratios and p-values calculated using DEGseq software for the comparison between TW30 at 0.1 MPa and DB110 at 0.1 MPa; columns (V, W): log_{2} ratios and p-values calculated using DEGseq software for the comparison between TW30 at 0.1 MPa and TW30 at 28 MPa; column (X): distance between transcription profile of each gene and that of ompH, calculated considering the Pearson correlation. Format: XLS Size: 43KB Download file This file can be viewed with: Microsoft Excel Viewer Campanaro et al. BMC Genomics 2012 13:567 doi:10.1186/1471-2164-13-567 |