Additional file 11.
Table S7. Analysis of the transcription start sites and corrections introduced. Column (A): locus tag; column (B): position of the start codon identified in our analysis; column (C): position of the TSS identified in the previous gene finding performed using Glimmer and Orpheus software; column (D): modification introduced; column (E): strand; columns (F-G): sequence and score of the ribosome binding site identified using MotifScanner software (the RBS site and the start codon are labeled in red); column (H): gene description; column (I): gene finding software (if any) corroborating the new start codon identified; column (J): description of the alignment performed using BLAST, alignments that agree with our start codon prediction have been reported; column (K): agreement with the structure of the transcript identified using RNA-seq, genes not confirmed using this method were modified considering only bioinformatics (RBS position and BLAST with other bacteria); column (M) sequence determined considering the new gene prediction.
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Campanaro et al. BMC Genomics 2012 13:567 doi:10.1186/1471-2164-13-567