Table 1

Summary of the sequencing and assembly
Sequence (n) Bases (bp)
Sequencing
  Raw reads 503,789 199,554,589
  Average read length 396 bp
  High-quality reads 445,787 175,500,089
  Reads used in assembly 421,845 165,785,088
  Average read length after trimming 393 bp
Contigs
  Reads assembled as contigs 382,884 150,473,414
  Number of contigs 13,426 13,438,442
  Average length of contigs 1,000 bp
  Range of contig length 50-9,881 bp
  Depth on contigs 14.48
Isotigs
  Number of isotigs 10,784 16,340,803
  Average length of isotigs 1,515 bp
  Range of isotig length 50-13,194
  Depth on isotigs 1.24

Zhang et al.

Zhang et al. BMC Genomics 2012 13:565   doi:10.1186/1471-2164-13-565

Open Data