Table 1 |
||
| Summary of the sequencing and assembly | ||
| Sequence (n) | Bases (bp) | |
| Sequencing | ||
| Raw reads | 503,789 | 199,554,589 |
| Average read length | 396 bp | |
| High-quality reads | 445,787 | 175,500,089 |
| Reads used in assembly | 421,845 | 165,785,088 |
| Average read length after trimming | 393 bp | |
| Contigs | ||
| Reads assembled as contigs | 382,884 | 150,473,414 |
| Number of contigs | 13,426 | 13,438,442 |
| Average length of contigs | 1,000 bp | |
| Range of contig length | 50-9,881 bp | |
| Depth on contigs | 14.48 | |
| Isotigs | ||
| Number of isotigs | 10,784 | 16,340,803 |
| Average length of isotigs | 1,515 bp | |
| Range of isotig length | 50-13,194 | |
| Depth on isotigs | 1.24 | |
Zhang et al. BMC Genomics 2012 13:565 doi:10.1186/1471-2164-13-565
