|Analysis of overlap among treatment groups|
|Treatment group||# of significantly, differentially regulated transcripts||p-value (Fisher's Exact Test)|
|Colony 1||Colony 2||In both|
|Saline x Control||340||555||111||p < 0.001|
|Bead x Control||213||398||70||p < 0.001|
|Bacteria x Control||278||1198||117||p < 0.001|
Fisher exact tests found more overlap than expected (p<0.001) for significantly, differentially expressed transcripts (FDR<0.01) in the saline-, bead- and bacteria-injected vs control groups between the two colonies.
*duplicate transcripts between groups removed.
Richard et al.
Richard et al. BMC Genomics 2012 13:558 doi:10.1186/1471-2164-13-558